IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_species_m2_intergenic_BS.nwk -s All_Species_m2_intergenic.nexus --scf 100 --prefix concord_intergenic -T 2
Seed:    669756 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 14:17:10 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_intergenic.nexus ... Nexus format detected
Alignment has 26 sequences with 746722 columns, 217762 distinct patterns
738092 parsimony-informative, 0 singleton sites, 8630 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  CG -> ActMar__CG
AldGig  CG -> AldGig__CG
ApaSpi  NN -> ApaSpi__NN
BatTri  CG -> BatTri__CG
CarIns  TG -> CarIns__TG
CheAbi  CG -> CheAbi__CG
CheMyd  CG -> CheMyd__CG
CheSer  CG -> CheSer__CG
ChrPic  CG -> ChrPic__CG
CuoAmb  CT -> CuoAmb__CT
CuoMcc  CT -> CuoMcc__CT
DerCor  CG -> DerCor__CG
DerMaw  NN -> DerMaw__NN
EmyOrb  CG -> EmyOrb__CG
EmySub  CG -> EmySub__CG
GopAga  CG -> GopAga__CG
MalTer  CG -> MalTer__CG
MauRee  CG -> MauRee__CG
MesTub  CG -> MesTub__CG
PelCas  CG -> PelCas__CG
PelSin  CC -> PelSin__CC
PlaMeg  CG -> PlaMeg__CG
PodExp  CG -> PodExp__CG
SteCar  TC -> SteCar__TC
TerCar  CG -> TerCar__CG
TraScr  CG -> TraScr__CG

            Gap/Ambiguity  Composition  p-value
   1  ActMar__CG    1.55%    failed      0.00%
   2  AldGig__CG    1.65%    failed      0.00%
   3  ApaSpi__NN    2.96%    passed     43.81%
   4  BatTri__CG   49.47%    failed      0.00%
   5  CarIns__TG   10.84%    failed      0.00%
   6  CheAbi__CG    6.46%    failed      0.00%
   7  CheMyd__CG    0.88%    failed      0.00%
   8  CheSer__CG    3.27%    failed      0.00%
   9  ChrPic__CG    0.39%    failed      0.00%
  10  CuoAmb__CT    2.25%    failed      0.00%
  11  CuoMcc__CT    0.82%    failed      0.00%
  12  DerCor__CG    1.70%    failed      0.00%
  13  DerMaw__NN    2.39%    passed     35.64%
  14  EmyOrb__CG   41.52%    failed      0.00%
  15  EmySub__CG    2.24%    failed      0.00%
  16  GopAga__CG    0.94%    failed      0.00%
  17  MalTer__CG    7.18%    failed      0.00%
  18  MauRee__CG    0.64%    failed      0.00%
  19  MesTub__CG    3.63%    failed      0.00%
  20  PelCas__CG    5.35%    failed      0.00%
  21  PelSin__CC    3.57%    passed     19.88%
  22  PlaMeg__CG    0.82%    failed      0.00%
  23  PodExp__CG   12.01%    failed      0.00%
  24  SteCar__TC    3.27%    failed      0.00%
  25  TerCar__CG    1.96%    failed      0.00%
  26  TraScr__CG    0.75%    failed      0.00%
****  TOTAL         6.48%  23 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_species_m2_intergenic_BS.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
6.365 sec
Tree with concordance factors written to concord_intergenic.cf.tree
Annotated tree (best viewed in FigTree) written to concord_intergenic.cf.tree.nex
Tree with branch IDs written to concord_intergenic.cf.branch
Concordance factors per branch printed to concord_intergenic.cf.stat
Date and Time: Wed Apr  7 14:17:23 2021
